Airey J, Baring M, Beck C, Chelliah Y, Deerinck T, Ellisman M, Houenou L, McKemy D, Sutko J, Talvenheimo J (1993) Failure to make normal α ryanodine receptor is an early event associated with the crooked neck dwarf (cn) mutation in chicken Developmental Dynamics 197:169-188 Direct Link

Airey J, Deerinck T, Ellisman M, Houenou L, Ivanenko A, Kenyon J, McKemy D, Sutko J (1993) Crooked neck dwarf (cn) mutant chicken skeletal muscle cells in low density primary cultures fail to express normal α ryanodine receptor and exhibit a partial mutant Developmental dynamics an official publication of the American Association of Anatomists 197:189-202 Direct Link

Akil H, Martone M, Essen D (2011) Challenges and opportunities in mining neuroscience data Science 331:708-712 PMC3102049

Akiyama T, Nozaki K, Kato S, Shimojo S, fNICT Osaka J, Peltier S, Lin A, Molina T, Yang G, Lee D (2005) 2005 IEEE International Symposium on Cluster Computing and the Grid Proceedings of the IEEE/ACM International Symposium on Cluster Computing and the Grid 2:463 Direct Link

Akiyama T, Teranishi Y, Nozaki K, Kato S, Shimojo S, Peltier S, Lin A, Molina T, Yang G, Lee D, Ellisman M, Naito S, Koike A, Matsumoto S, Yoshida K, Mori H (2005) Scientific grid activities in Cybermedia Center, Osaka University Cluster Computing and the Grid, 2005. CCGrid 2005. IEEE International Symposium on 1:463-470 Direct Link

Akiyama T, Shimojo S, Nishio S, Kitatsuji Y, Peltier S, Hutton T, Lin F (2003) Telecontrol of ultra-high voltage electron microscope over global IPv6 network 2003 Symposium on Applications and the Internet Workshops, 2003. Proceedings.:184-187 Direct Link

Altintas I, Lin A, Chen J, Churas C, Gujral M, Sun S, Li W, Manansala R, Sedova M, Grethe J, Ellisman M (2010) Camera 2.0: A data-centric metagenomics community infrastructure driven by scientific workflows 2010 6th World Congress on Services:325-359 Direct Link

Ambrosi C, Gassmann O, Pranskevich J, Boassa D, Smock A, Wang J, Dahl G, Steinem C, Sosinsky G (2010) Pannexin1 and Pannexin2 channels show quaternary similarities to connexons and different oligomerization numbers from each other The Journal of Biological Chemistry 285:24420-24431 Direct Link

Ambrosi C, Walker A, Depriest A, Cone A, Lu C, Badger J, Skerrett I, Sosinsky G (2013) Analysis of trafficking, stability and function of human connexin 26 gap junction channels with deafness-causing mutations in the fourth transmembrane helix. PloS one 8:e70916 PMC3744544

Ambrosi C, Boassa D, Pranskevich J, Smock A, Oshima A, Xu J, Nicholson B, Sosinsky G (2010) Analysis of four connexin26 mutant gap junctions and hemichannels reveals variations in hexamer stability Biophysical journal 98:1809-1819 Direct Link

Astakhov V, Gupta A, Grethe J, Ross E, Little D, Yilmaz A, Qian X, Santini S, Martone M, Ellisman M (2006) Semantically based data integration environment for biomedical research 19th IEEE Symposium on ComputerBased Medical Systems CBMS06:171-176 Direct Link

Atkins D, Borgman C, Bindoff N, Ellisman M, Feldman S, Foster I, Heck A, Heermann D, Lane J, Milanesi L, Paraki J, von Ruden W, Szalay A, Tackley P, Wensinck H, Ynnerman A (2009) Building a UK foundation for the transformative enhancement of research and innovation: report of the international panel for the 2009 review of the UK Research Councils and Science Programme Review Literature And Arts Of The Americas:68 Direct Link

Badorff C, Lee G, Lamphear B, Martone M, Campbell K, Rhoads R, Knowlton K (1999) Enteroviral protease 2A cleaves dystrophin: evidence of cytoskeletal disruption in an acquired cardiomyopathy Nature Medicine 5:320-326 Direct Link

Bagnall M, Hull C, Bushong E, Ellisman M, Scanziani M (2011) Multiple clusters of release sites formed by individual thalamic afferents onto cortical interneurons ensure reliable transmission. Neuron 71:180-94 Direct Link

Balboa M, Shirai Y, Gaietta G, Ellisman M, Balsinde J, Dennis E (2003) Localization of group V phospholipase A2 in caveolin-enriched granules in activated P388D1 macrophage-like cells The Journal of Biological Chemistry 278:48059-48065 Direct Link

Barsoum E, Yuan H, Gerencser A, Liot G, Kushnareva Y, Gräber S, Kovacs I, Lee W, Waggoner J, Cui J, White A, Bossy B, Martinou J, Youle R, Lipton S, Ellisman M, Perkins G, Bossy-Wetzel E (2006) Nitric oxide-induced mitochondrial fission is regulated by dynamin-related GTPases in neurons The European Molecular Biology Organization Journal 25:3900-3911 Direct Link

Beahm D, Oshima A, Gaietta G, Hand G, Smock A, Zucker S, Toloue M, Chandrasekhar A, Nicholson B, Sosinsky G (2006) Mutation of a conserved threonine in the third transmembrane helix of α-and β-connexins creates a dominant-negative closed gap junction channel The Journal of Biological Chemistry 281:7994-8009 Direct Link

Beahm D, Gaietta G, Chandrasekhar A, Hand G, Smock A, Oshima A, Nicholson B, Sosinsky G (2004) A Closed Gap Junction Channel State Caused By A Single Site Mutation in the 3rd Transmembrane Helix Microscopy and Microanalysis 10:1498-1499 Direct Link

Bencheikh-Latmani R, Obraztsova A, Mackey M, Ellisman M, Tebo B (2007) Toxicity of Cr (III) to Shewanella sp. strain MR-4 during Cr (VI) reduction Environmental Science & Technology 41:214-220 Direct Link

Berlanga M, Price D, Phung B, Giuly R, Terada M, Yamada N, Cyr M, Caron M, Laakso A, Martone M, Ellisman M (2011) Multiscale imaging characterization of dopamine transporter knockout mice reveals regional alterations in spine density of medium spiny neurons Brain Research 1390:41-9 PMC3104025

Berlanga M, Phan S, Bushong E, Wu S, Kwon O, Phung B, Lamont S, Terada M, Tasdizen T, Martone M, Ellisman M (2011) Three-dimensional reconstruction of serial mouse brain sections: solution for flattening high-resolution large-scale mosaics Frontiers in Neuroanatomy 5:17 Direct Link

Bielas S, Serneo F, Chechlacz M, Deerinck T, Perkins G, Allen P, Ellisman M, Gleeson J (2007) Spinophilin facilitates dephosphorylation of doublecortin by PP1 to mediate microtubule bundling at the axonal wrist Cell 129:579-591 Direct Link

Bilhorn R, Ellisman M (2011) Apparatus and method including a direct bombardment detector and a secondary detector for use in electron microscopy US Patent 7,952,073:1 Direct Link

Boassa D, Solan J, Papas A, Thornton P, Lampe P, Sosinsky G (2010) Trafficking and recycling of the connexin43 gap junction protein during mitosis Traffic Copenhagen Denmark 11:1471-1486 Direct Link

Boassa D, Berlanga M, Yang M, Terada M, Hu J, Bushong E, Hwang M, Masliah E, George J, Ellisman M (2013) Mapping the Subcellular Distribution of α-Synuclein in Neurons using Genetically Encoded Probes for Correlated Light and Electron Microscopy: Implications for Parkinson's Disease Pathogenesis. The Journal of neuroscience : the official journal of the Society for Neuroscience 33:2605-15 PMC3711410

Boassa D, Ambrosi C, Qiu F, Dahl F, Gaietta G, Sosinsky G (2007) Pannexin1 channels contain a glycosylation site that targets the hexamer to the plasma membrane The Journal of Biological Chemistry 282:31733-31743 Direct Link

Boassa D, Qiu F, Dahl G, Sosinsky G (2008) Trafficking dynamics of glycosylated pannexin1 proteins Cell Communication and Adhesion 15:119-32 Direct Link

Bobik M, Ellisman M, Rudy B, Martone M (2004) Potassium channel subunit Kv3. 2 and the water channel aquaporin-4 are selectively localized to cerebellar pinceau Brain research 1026:168-78 Direct Link

Bossy B, Perkins G, Bossy-Wetzel E (2008) Clearing the brain's cobwebs: the role of autophagy in neuroprotection Current Neuropharmacology 6:97-101 pmc2647148

Bossy-Wetzel B, Talantova M, Lee W, Schölzke M, Harrop A, Mathews E, Götz T, Han J, Ellisman M, Perkins G, Lipton S (2004) Crosstalk between Nitric Oxide and Zinc Pathways to Neuronal Cell Death Involving Mitochondrial Dysfunction and p38-Activated K+ Channels Neuron 41:351-365 Direct Link

Bouwer J, Mackey M, Lawrence A, Deerinck T, Jones Y, Terada M, Martone M, Peltier S, Ellisman M (2007) The Application of Energy‐Filtered Electron Microscopy to Tomography of Thick, Selectively Stained Biological Samples Methods in Cell Biology 79:643-660 Direct Link

Bouwer J, Peltier S, Jin L, Khodjasaryan K, Geist S, Xuong N, Ellisman M (2005) Analysis of the Performance of an 8k x 8k Lens Coupled Detector for Wide-field, High-resolution Transmission Electron Microscopy (TEM) Microscopy and Microanalysis 11:62 Direct Link

Bouwer J, Mackey M, Lawrence A, Deerinck T, Jones Y, Terada M, Martone M, Peltier S, Ellisman M (2005) PART V-Aspects of Data Collection and Analysis-26. The Application of Energy-Filtered Electron Microscopy to Tomography of Thick, Selectively Stained Biological Samples Methods in Cell Biology 79:644 Direct Link

Bouwer J, Astakov V, Wong W, Molina T, Rowley V, Lamont S, Hakozaki H, Kwon O, Kulungowski A, Terada M (2011) Petabyte Data Management and Automated Data Workflow in Neuroscience: Delivering Data from the Instruments to the Researcher's Fingertips Microscopy and Microanalysis 17:276-277 Direct Link

Bouwer J, Mackey M, Lawrence A, Deerinck T, Jones Y, Terada M, Martone M, Peltier S, Ellisman M (2004) Automated Energy Filtered Most Probable Loss Tomography of Thick Selectively Stained Biological Samples Microscopy and Microanalysis 10:1208-1209 Direct Link

Bowman G, Comolli L, Gaietta G, Fero M, Hong S, Jones Y, Lee J, Downing K, Ellisman M, McAdams H, Shapiro L (2010) Caulobacter PopZ forms a polar subdomain dictating sequential changes in pole composition and function. Molecular microbiology 76:173-89 PMC2935252

Brown M, Smarr L, DeFanti T, Leigh J, Ellisman M, Papadopoulos P (2006) The OptIPuter: A national and global-scale cyberinfrastructure for enabling LambdaGrid computing TeraGrid'06 Conference:4 Direct Link

Bubulya P, Prasanth K, Deerinck T, Gerlich D, Beaudouin J, Ellisman M, Ellenberg J, Spector D (2004) Hypophosphorylated SR splicing factors transiently localize around active nucleolar organizing regions in telophase daughter nuclei The Journal of Cell Biology 167:51-63 Direct Link

Buccigrossi R, Ellisman M (2008) The Neuroimaging Informatics Tools and Resources Clearinghouse (NITRC) AMIA Annual Symposium proceedings AMIA Symposium AMIA Symposium:1000 PMID:18999128

Bueno C, Betz R, Ellisman M, Fan G (1997) Hybrid luminescent device for imaging of ionizing and penetrating radiation US Patent 5,594,253:17 Direct Link

Bug W, Astahkov V, Boline J, Fennema-Notestine C, Grethe J, Gupta A, Kennedy D, Rubin D, Sanders B, Turner J, Martone M (2008) Data federation in the Biomedical Informatics Research Network: tools for semantic annotation and query of distributed multiscale brain data. AMIA Annu Symp Proc:1220 PMID:18999211

Bug W, Ascoli G, Grethe J, Gupta A, Fennema-Notestine C, Laird A, Larson S, Rubin D, Shepherd G, Turner J, Martone M (2008) The NIFSTD and BIRNLex vocabularies: building comprehensive ontologies for neuroscience Neuroinformatics 6:175-194 Direct Link

Bumbarger D, Wijeratne S, Carter C, Crum J, Ellisman M, Baldwin J (2006) Three-dimensional reconstruction of the nose epidermal cells in the microbial feeding nematode, Acrobeles complexus (Nematoda: Rhabditida) Journal of Morphology 512:1257-72 Direct Link

Bumbarger D, Crum J, Ellisman M, Baldwin J (2005) Complex configuration of epidermal cells underlying cuticular feeding appendages in Acrobeles complexus (Nematoda: Rhabditida) International Worm Meeting Direct Link

Burette A, Lesperance T, Crum J, Martone M, Volkmann N, Ellisman M, Weinberg R (2012) Electron tomographic analysis of synaptic ultrastructure. Journal of Comparative Neurology 520:2697-711 PMID:22684938

Bushong E, Martone M, Ellisman M (2003) Examination of the relationship between astrocyte morphology and laminar boundaries in the molecular layer of adult dentate gyrus Journal of Comparative Neurology 462:241-251 Direct Link

Bushong E, Martone M, Jones Y, Ellisman M (2002) Protoplasmic astrocytes in CA1 stratum radiatum occupy separate anatomical domains Journal of Neuroscience 22:183-92 Direct Link

Bushong E, Martone M, Ellisman M (2004) Maturation of astrocyte morphology and the establishment of astrocyte domains during postnatal hippocampal development. International Journal of Developmental Neuroscience 22:73-86 Direct Link

Butko M, Yang J, Geng Y, Kim H, Jeon N, Shu X, Mackey M, Ellisman M, Tsien R, Lin M (2012) Fluorescent and photo-oxidizing TimeSTAMP tags track protein fates in light and electron microscopy. Nature Neuroscience 15:1742-51 PMID:23103964

Cachat J, Brandowski A, Grethe J, Gupta A, Astakhov V, Imam F, Lamont S, Martone M (2012) A Survey of the Neuroscience Resource Landscape: Perspectives from the Neuroscience Information Network International Review of Neurology 103:39-68 Direct Link

Capani F, Martone M, Deerinck T, Ellisman M (2001) Selective localization of high concentrations of F‐actin in subpopulations of dendritic spines in rat central nervous system: A three‐dimensional electron microscopic Journal of Comparative Neurology 435:156-170 Direct Link

Capani F, Deerinck T, Ellisman M, Bushong E, Bobik M, Martone M (2001) Phalloidin-Eosin Followed by Photo-oxidation A Novel Method for Localizing F-Actin at the Light and Electron Microscopic Levels The Journal of Histochemistry and Cytochemistry 49:1351-61 Direct Link

Capani F, Ellisman M, Martone M (2005) Localization of F-Actin in Central Nervous System using Phalloidin Photo-Oxidation Microscopy and Microanalysis 19:13-15 Direct Link

Capani F, Ellisman M, Martone M (2001) Filamentous actin is concentrated in specific subpopulations of neuronal and glial structures in rat central nervous system Brain Research 923:1-11 Direct Link

Capani F, Saraceno E, Boti V, Aon-Bertolino L, Fernández J, Gato F, Kruse M, Giraldez L, Ellisman M, Coirini H (2008) A tridimensional view of the organization of actin filaments in the central nervous system by use of fluorescent photooxidation Biocell 112:100-109 Direct Link

Casanova H, Berman F, Bartol T, Gokcay E, Sejnowski T, Birnbaum A, Dongarra J, Miller M, Ellisman M, Faerman M, Obertelli G, Wolski R, Pomerantz S, Stiles J (2004) The virtual instrument: Support for grid-enabled MCell simulations The International Journal of High Performance Computing Applications 18:3-17 Direct Link

Chang L, Jones Y, Ellisman M (2003) JNK1 is required for maintenance of neuronal microtubules and controls phosphorylation of microtubule-associated proteins Developmental Cell 4:521-33 Direct Link

Chang S, Zagha E, Kwon E, Ozaita A, Bobik M, Martone M, Ellisman M, Heintz N, Rudy B (2007) Distribution of Kv3. 3 potassium channel subunits in distinct neuronal populations of mouse brain Journal of Comparative Neurology 502:953-972 Direct Link

Chen L, Gupta A, Martone M, Fong L, Wong-Barnum M (2006) OntoQuest: exploring ontological data made easy VLDB '06 Proceedings of the 32nd international conference on Very large data bases:1183-86 Direct Link

Chow S, Hakozaki H, Price D, MacLean N, Deerinck T, Bouwer J, Martone M, Peltier S, Ellisman M (2006) Automated microscopy system for mosaic acquisition and processing Journal of Microscopy 222:76-84 Direct Link

Cirulli V, Beattie G, Klier G, Ellisman M, Ricordi C, Quaranta V, Frasier F, Ishii J, Hayek A, Salomon D (2000) Expression and Function of αvβ3 and αvβ5 Integrins in the Developing Pancreas Roles in the Adhesion and Migration of Putative Endocrine Progenitor Cells Journal of Cell Biology 150:1445-60 Direct Link

Coggan J, Batol T, Esquenaszi E, Stiles J, Lamont S, Martone M, Berg D, Ellisman M, Sejnowski T (2005) Evidence for Ectopic Neurotransmission at a Neuronal Synapse Science 309:446-451 Direct Link

Colanzi A, Deerinck T, Ellisman M, Malhotra V (2000) A specific activation of the mitogen-activated protein kinase kinase 1 (MEK1) is required for Golgi fragmentation during mitosis The Journal of Cell Biology 149:331-40 Direct Link

Comoletti D, De Jaco A, Jennings L, Flynn R, Gaietta G, Tsigelny I, Ellisman M, Taylor P (2004) The Arg451Cys-neuroligin-3 mutation associated with autism reveals a defect in protein processing Journal of Neuroscience 24:4889-93 Direct Link

Cone A, Cavin G, Ambrosi C, Hakozaki H, Wu-Zhang A, Kunkel M, Newton A, Sosinsky G (2014) Protein Kinase Cδ-Mediated Phosphorylation of Connexin43 Gap Junction Channels Causes Movement within Gap Junctions followed by Vesicle Internalization and Protein Degradation. The Journal of biological chemistry PMID:24500718

Cone A, Ambrosi C, Scemes E, Martone M, Sosinsky G (2013) A comparative antibody analysis of Pannexin1 expression in four rat brain regions reveals varying subcellular localizations Frontiers in Pharmacology 4:6 PMC3565217

Cone A, Martell J, Deerinck T, Cavin G, Ambrosi C, Ting A, Ellisman M, Sosinsky G (2013) Correlative Light and Electron Microscopic Imaging of Gap Junction Life Cycle Dynamics Using the EM Protein Tags and Phospho-Specific Antibodies Microscopy and … 19:552-553 Direct Link

Crisa L, Cirulli V, Ellisman M, Ishii J, Elices M, Salomon D (1996) Cell adhesion and migration are regulated at distinct stages of thymic T cell development: the roles of fibronectin, VLA4, and VLA5 Journal of Experimental Medicine 184:215 Direct Link

Crisa L, Cirulli V, Smith K, Ellisman M, Torbett B, Salomon D (1999) Human cord blood progenitors sustain thymic T-cell development and a novel form of angiogenesis Blood 94:3928-40 Direct Link

Dai Y, Weinreb R, Kim K, Nguyen D, Park S, Sun X, Lindsey J, Ellisman M, Ju W (2011) Inducible nitric oxide synthase-mediated alteration of mitochondrial OPA1 expression in ocular hypertensive rats Investigative Ophthalmology & Visual Science 52:2468-76 PMC3088543

Darshi M, Mendiola V, Mackey M, Murphy A, Koller A, Perkins G, Ellisman M, Taylor S (2011) ChChd3, an inner mitochondrial membrane protein, is essential for maintaining crista integrity and mitochondrial function. Journal of Biological Chemistry 286:2918-32 PMC3024787

Davalos D, Ryu J, Merlini M, Baeten K, Le Moan N, Petersen M, Deerinck T, Smirnoff D, Bedard C, Hakozaki H, Gonias Murray S, Ling J, Lassmann H, Degen J, Ellisman M, Akassoglou K (2012) Fibrinogen-induced perivascular microglial clustering is required for the development of axonal damage in neuroinflammation Nature Communications 3:1227 PMC3514498

Davalos D, Lee J, Smith W, Brinkman B, Ellisman M, Zheng B, Akassoglou K (2008) Stable in vivo imaging of densely populated glia, axons and blood vessels in the mouse spinal cord using two-photon microscopy Journal of Neuroscience Methods 169:1-7 Direct Link

Day M, Gaietta G, Sastri M, Koller A, Mackey M, Scott J, Perkins G, Ellisman M, Taylor S (2011) Isoform-specific targeting of PKA to multivesicular bodies The Journal of Cell Biology 193:347-63 Direct Link

De Jaco A, Kovarik Z, Comoletti D, Jennings L, Gaietta G, Ellisman M, Taylor P (2005) A single mutation near the C-terminus in/hydro-lase fold protein family causes a defect in protein processing Chemico-Biological Interactions 157-158:371-2 Direct Link

De Jaco A, Comoletti D, Kovarik Z, Gaietta G, Radic Z, Lockridge O, Ellisman M, Taylor P (2006) A mutation linked with autism reveals a common mechanism of endoplasmic reticulum retention for the α, β-hydrolase fold protein family Journal of Biological Chemistry 281:9667-76 Direct Link

De Jaco A, Lin M, Dubi N, Comoletti D, Miller D, Camp S, Ellisman M, Butko M, Tsien R, Taylor P (2010) Neuroligin trafficking deficiencies arising from mutations in the α/β-hydrolase fold protein family Journal of Biological Chemistry 285:28674-28682 Direct Link

Deerinck T, Bushong E, Thor A, Ellisman M (2010) NCMIR methods for 3D EM: A new protocol for preparation of biological specimens for serial block face scanning electron microscopy Microscopy:6-8 Direct Link

Deerinck T, Giepmans B, Smarr B, Martone M, Ellisman M (2007) Light and electron microscopic localization of multiple proteins using quantum dots Methods In Molecular Biology 374:43-53 Direct Link

Deerinck T, Levinson S, Bennett G, Ellisman M (1997) Clustering of voltage-sensitive sodium channels on axons is independent of direct Schwann cell contact in the dystrophic mouse Journal of Neuroscience 17:5080-5088 Direct Link

Deerinck T, Martone M, Lev-Ram V, Green D, Tsien R, Spector D, Huang S, Ellisman M (1994) Fluorescence photooxidation with eosin: a method for high resolution immunolocalization and in situ hybridization detection for light and electron microscopy. Journal of Cell Biology 126:901-910 Direct Link

Deerinck T, Giepmans B, Ellisman M (2005) Quantum dots as cellular probes for light and electron microscopy Microscopy and Microanalysis 11:914-15 Direct Link

DeFanti T, Leigh J, Brown M, Sandin D, Yu O, Zhang C, Singh R, He E, Alimohideen J, Krishnaprasad N, Grossman R, Mazzucco M, Smarr L, Ellisman M, Papadopoulos A, Chien A, Orcutt J (2003) Teleimmersion and Visualization with the OptIPuter Proceedings of the 12th International Conference on Artificial Reality and Telexistence (ICAT 2002):25-71 Direct Link

Devor M, Keller C, Ellisman M (1990) Spontaneous discharge of afferents in a neuroma reflects original receptor tuning Brain Research 517:245-50 Direct Link

Dohnalkova A, Mackey M, Treas H, Fredrickson J, Ellisman M (2003) 3D Reconstruction of Bacterial Cells Provides Basis for Modeling their Cellular Processes and Molecular Networks Microscopy and Microanalysis 9:1158-9 Direct Link

Dollé P, Castrillo J, Theill L, Deerinck T, Ellisman M, Karin M (1990) Expression of GHF-1 protein in mouse pituitaries correlates both temporally and spatially with the onset of growth hormone gene activity Cell 60:809-20 Direct Link

Dolmatova E, Spagnol G, Boassa D, Baum J, Keith K, Ambrosi C, Kontaridis M, Sorgen P, Sosinsky G, Duffy H (2012) Cardiomyocyte ATP release through pannexin 1 aids in early fibroblast activation. American journal of physiology. Heart and circulatory physiology 303:H1208-18 PMID:22982782

Dolmatova E, Baum J, Boassa D, Keith K, Kontaridis M, Sorgen P, Sosinsky G, Duffy H (2010) Novel Cardiomyocyte Complexes Involved in Cell-Cell Signaling Following Myocardial Infarction: The Role of Pannexin1 Channels HeartRhythm 7:1717 Direct Link

Dowding J, Lubitz S, Karakoti A, Kim A, Seal S, Ellisman M, Perkins G, Bossy-Wetzel E, Self W (2010) Cerium Oxide Nanoparticles Prevent Nitrosative Stress in Neuronal Cell Culture Model Free Radical Biology and Medicine 49:S181 Direct Link

Eils R, Ellisman M, Huang C, Markatos E (2005) From Grid to Healthgrid: Proceedings of Healthgrid 2005 Healthgrid 2005 Programme Committee:viii Direct Link

Eliceiri K, Berthold M, Goldberg I, Ibáñez L, Manjunath B, Martone M, Murphy R, Peng H, Plant A, Roysam B, Stuurman N, Swedlow J, Tomancak P, Carpenter A (2012) Biological imaging software tools Nature 9:697-710 Direct Link

Ellisman M (2012) Multiscale Imaging of the Nervous System: Where is the Dark Matter? Hong Kong University of Science and Technology, 2012 Direct Link

Ellisman M (1994) The merger of microscopy and advanced computing: A new frontier for the 21st century Proceedings of the Annual Meeting-Electron Microscopy Society of America 52:10 Direct Link

Ellisman M, Hutton T, Kirkland A, Lin A, Lin C, Molina T, Peltier S, Singh R, Tang K, Trefethen A (2009) The OptIPuter microscopy demonstrator: enabling science through a transatlantic lightpath Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences 367:2645-2653 Direct Link

Ellisman M, Deerinck T, Ouyang Y (1990) Identification and localization of ryanodine binding proteins in the avian central nervous system Neuron 5:135-46 Direct Link

Ellisman M, Director B, Reilley C (2004) BIRN Grid Collaborations Will Enhance Security, Performance, and Scalabilty BIRNing Issues 3:2-3 Direct Link

Ellisman M, Deerinck T (2011) Advances in Extreme-Scale 3D EM: Specimen Preparation and Recording Systems for Electron Microscopic Tomography and Serial Block Face SEM Microscopy and Microanalysis 117:976-7 Direct Link

Ellisman M (2005) An Historical Perspective on Digital Imaging in Transmission Electron Microscopy: Looking to the Future Microscopy and Microanalysis 11:604-5 Direct Link

Ellisman M (2006) The BIRN Project: Imaging the Nervous System SLAC Colloquium Series, SLAC National Accelerator Laboratory Direct Link

Ellisman M (2005) Cyberinfrastructure and the future of collaborative work Issues in Science and Technology 22:43-50 Direct Link

Ellisman M, Brady M, Hart D, Lin F (2004) The emerging role of biogrids Communications of the ACM 47:52-57 Direct Link

Ellisman M, Tsien R (2002) Identifying “generation gaps” among proteins Analytical Chemistry 296:503 Direct Link

Ellisman M, Hadida M, Greer D, Wong M, Lindsey S, Peltier S, Young S (1998) Telemicroscopy: development of a collaboratory for microscopic digital anatomy Microscopy and Microanalysis 4:12-13 Direct Link

Ellisman M, Deerinck T, Shu X, Sosinsky G (2012) Picking faces out of a crowd: genetic labels for identification of proteins in correlated light and electron microscopy imaging Methods in cell biology 111:139-55 PMC3532940

Engene N, Rottacker E, Kastovsky J, Byrum T, Choi H, Ellisman M, Komárek J, Gerwick W (2012) Moorea producens gen. nov., sp. nov. and Moorea bouillonii comb. nov., tropical marine cyanobacteria rich in bioactive secondary metabolites International Journal of Systematic and Evolutionary Microbiology 62:1171-8 Direct Link

Engene N, Choi H, Esquenazi E, Rottacker E, Ellisman M, Dorrestein P, Gerwick W (2011) Underestimated biodiversity as a major explanation for the perceived rich secondary metabolite capacity of the cyanobacterial genus Lyngbya. Environmental Microbiology 13:1601-10 Direct Link

Everts M, Saini V, Leddon J, Kok R, Stoff-Khalili M, Preuss M, Millican C, Perkins G, Brown J, Bagaria H, Nikles D, Johnson D, Zharov V, Curiel D (2006) Covalently linked Au nanoparticles to a viral vector: potential for combined photothermal and gene cancer therapy Nano Letters 6:587-591 Direct Link

Falivelli G, De Jaco A, Favaloro F, Kim H, Wilson J, Dubi N, Ellisman M, Abrahams B, Taylor P, Comoletti D (2012) Inherited genetic variants in autism-related CNTNAP2 show perturbed trafficking and ATF6 activation. Human molecular genetics 21:4761-73 PMID:22872700

Fan G, Peltier S, Lamont S, Dunkelberger D, Burke B, Ellisman M (2000) Multiport-readout frame-transfer 5 megapixel CCD imaging system for TEM applications. Ultramicroscopy 84:75 PMID:10896142

Fan G, Peltier S, Lamont S, Young S, Dunkelberger D, Ellisman M (1999) Multiport-Readout Frame-Transfer 5 Megapixel CCD. Digital System For IVEM Applications Microscopy & Microanalysis-New York 5:364-365 Direct Link

Fan G, Fujisaki H, Miyawaki A, Tsay R, Tsien R, Ellisman M (1999) Video-rate scanning two-photon excitation fluorescence microscopy and ratio imaging with cameleons. Biophysical Journal 76:2412-20 PMC1300213

Fan G, Bueno C, Dunkelberger C, Ellisman M (1993) Performance characteristics of radioluminescent fiber optics as electron scintillators Journal of Electron Microscopy 42:419-423 Direct Link

Fan G, Young S, Miller P, Ellisman M (1995) Conditions for electron tomographic data acquisition Journal of Electron Microscopy 44:15-21 Direct Link

Fan G, Ellisman M, Dunkelberger D (1994) Stereoscopy by tilted illumination in transmission electron microscopy Ultramicroscopy 55:155-64 Direct Link

Fan G, Ellisman M (1996) Optimization of thin-foil based phosphor screens for CCD imaging in TEM in the voltage range of 80–400 kV Ultramicroscopy 66:11-19 Direct Link

Fan G, Maldonado F, Zhang Y, Kincaid R, Ellisman M, Gastinel L (1996) In vivo calcineurin crystals formed using the baculovirus expression system Microscopy Research and Technique 34:77-86 Direct Link

Fernandez J, Lawrence A, Roca J, Garcia I, Ellisman M, Carazo J (2003) High performance computing in electron microscope tomography of complex biological structures Performance Computing 2565:166-180 Direct Link

Fernández J, Lawrence A, Roca J, García I, Ellisman M, Carazo J (2002) High-performance electron tomography of complex biological specimens Journal of Structural Biology 138:6-20 Direct Link

Fitzpatrick K, Skasko M, Deerinck T, Crum J, Ellisman M, Guatelli J (2010) Direct restriction of virus release and incorporation of the interferon-induced protein BST-2 into HIV-1 particles PLoS Pathogens 6:e1000701 Direct Link

Fomina A, Deerinck T, Ellisman M, Cahalan M (2003) Regulation of membrane trafficking and subcellular organization of endocytic compartments revealed with FM1-43 in resting and activated human T cells Experimental cell research 291:150-66 Direct Link

Foo L, Allen N, Bushong E, Ventura P, Zhung W, Zhou L, Cahoy J, Daneman R, Zong H, Ellisman M, Barres B (2011) Development of a method for the purification and culture of rodent astrocytes Neuron 71:799-811 Direct Link

Fox D, Perkins G, Johnson J, Dixit A, Ellisman M (2007) 15 Differential susceptibility of rod photoreceptor synaptic and non-synaptic mitochondria to divalent cation exposure: Neuroprotection by Bcl-xL overexpression Mitochondrion 7:408 Direct Link

Frey T, Perkins G, Ellisman M (2006) Electron tomography of membrane-bound cellular organelles Annual Review of Biophysics and Biomolecular Structure 35:199-224 Direct Link

Friedmann-Morvinski D, Bushong E, Ke E, Soda Y, Marumoto T, Singer O, Ellisman M, Verma I (2012) Dedifferentiation of neurons and astrocytes by oncogenes can induce gliomas in mice Science 338:1080-4 Direct Link

Gad H, Ringstad N, Löw P, Kjaerulff O, Gustafsson J, Wenk M, Paolo G, Nemoto Y, Crum J, Ellisman M, De Camilli P, Shupliakov O, Brodin L (2000) Fission and uncoating of synaptic clathrin-coated vesicles are perturbed by disruption of interactions with the SH3 domain of endophilin Neuron 27:301-312 Direct Link

Gaietta G, Deerinck T, Ellisman M (2011) Fluorescence Photoconversion of Biarsenical-Labeled Cells for Correlated Electron Microscopy (EM) Cold Spring Harbor Protocols 2011:pdb.prot5547 Direct Link

Gaietta G, Giepmans B, Deerinck T, Smith W, Ngan L, Llopis J, Adams S, Tsien R, Ellisman M (2006) Golgi twins in late mitosis revealed by genetically encoded tags for live cell imaging and correlated electron microscopy Proceedings of the National Academy of Sciences of the United States of America 103:17777-17782 Direct Link

Gaietta G, Yoder E, Deerinck T, Kinder K, Hanono A, Han A, Wu C, Ellisman M (2003) 5-HT2a receptors in rat sciatic nerves and Schwann cell cultures Journal of Neurocytology 32:373-380 Direct Link

Gaietta G, Deerinck T, Adams S, Bouwer J, Tour O, Laird D, Sosinsky G, Tsien R, Ellisman M (2002) Multicolor and electron microscopic imaging of connexin trafficking Science 296:503-507 Direct Link

Garcia M, Lobsiger C, Shah S, Deerinck T, Crum J, Young D, Ward C, Crawford T, Gotow T, Uchiyama T, Ellisman M, Calcutt N, Cleveland D (2003) NF-M is an essential target for the myelin-directed “outside-in” signaling cascade that mediates radial axonal growth Journal of Cell Biology 163:1011-1020 Direct Link

Garcia M, Rao M, Fujimoto J, Garcia V, Shah S, Crum J, Gotow T, Uchiyama Y, Ellisman M, Calcutt N, Cleveland D (2009) Phosphorylation of highly conserved neurofilament medium KSP repeats is not required for myelin-dependent radial axonal growth Journal of Neuroscience 29:1277-1284 Direct Link

Gassmann O, Kreir M, Ambrosi C, Pranskevich J, Oshima A, Röling C, Sosinsky G, Fertig N, Steinem C (2009) The M34A mutant of Connexin26 reveals active conductance states in pore-suspending membranes Journal of Structural Biology 168:168-176 PMC2785080

Giepmans B, Adams S, Ellisman M, Tsien R (2006) The fluorescent toolbox for assessing protein location and function Science 312:217-24 Direct Link

Giepmans B, Deerinck T, Smarr B, Jones Y, Ellisman M (2005) Correlated light and electron microscopic imaging of multiple endogenous proteins using Quantum dots Nature Methods 2:743-49 Direct Link

Gil Y, Deelman E, Ellisman M, Fahringer T, Fox G, Gannon D, Goble C, Livny M, Moreau L, Myers J (2006) Report on the 2006 NSF Workshop on Challenges of Scientific Workflows Challenges of Scientific Workflows, NSF:11 Direct Link

Gil Y, Deelman E, Ellisman M, Fahringer T, Fox G, Gannon D, Goble C, Livny M, Moreau L, Myers J (2007) Examining the challenges of scientific workflows Computer 40:24-32 Direct Link

Giuly R, Kim K, Ellisman M (2013) DP2: Distributed 3D image segmentation using micro-labor workforce Bioinformatics 29:1359-60 PMC3654713

Giuly R, Martone M, Ellisman M (2012) Method: automatic segmentation of mitochondria utilizing patch classification, contour pair classification, and automatically seeded level sets BMC Bioinformatics 13:29 Direct Link

Godson C, Masliah E, Balboa M, Ellisman M, Insel P (1996) Isoform-specific redistribution of protein kinase C in living cells Biochimica et Biophysica Acta 1331:63-71 Direct Link

Grethe J, Baru C, Gupta A, James M, Ludaescher B, M.E. M, Papadopoulos P, Peltier S, Rajasekar A, Santini S, Zaslavsky I, Ellisman M (2005) Biomedical Informatics Research Network: Building a National Collaboratory to Hasten the Derivation of New Understanding and Treatment of Disease From Grid to Healthgrid: Proceedings of Healthgrid 2005:256-9 Direct Link

Groves P, Garcia-Munoz M, Linder J, Manley M, Martone M, Young S, Houk J, Davis J, Beiser D (1995) Elements of the intrinsic organization and information processing in the neostriatum Models of Information Processing in the Basal Ganglia:51-96 Direct Link

Guo Y, Darshi M, Ma Y, Perkins G, Shen Z, Haushalter K, Saito R, Chen A, Lee Y, Patel H, Briggs S, Ellisman M, Olefsky J, Taylor S (2013) Quantitative proteomic and functional analysis of liver mitochondria from high fat diet (HFD) diabetic mice. Molecular & cellular proteomics : MCP 12:3744-58 PMID:24030101

Gupta A, Ludäscher B, Grethe J, Martone M (2003) Towards a formalization of disease-specific ontologies for neuroinformatics Neural Networks 16:1277-92 Direct Link

Gupta A, Ludascher B, Martone M (2000) Knowledge-based integration of neuroscience data sources Proceedings 12th International Conference on Scientific and Statistica Database Management 183:39-52 Direct Link

Gupta A, Ludäscher B, Martone M (2001) An extensible model-based mediator system with domain maps 17th Intlernational Conference on Data Engineering (ICDE) Direct Link

Gupta A, Ludäscher B, Martone M (2003) Registering scientific information sources for semantic mediation Conceptual Modeling—ER 2002 2503:182-98 Direct Link

Gupta A, Larson S, Condit C, Gupta S, Fong L, Chen L, Martone M (2007) Toward an ontological database for subcellular neuroanatomy Advances in Conceptual Modeling – Foundations and Applications 4802:64-73 Direct Link

Gupta A, Ludascher B (2003) BIRNAM: a semantic mediator for solving real-world neuroscience problems Proceedings of the 2003 ACM SIGMOD international conference on Management of data Direct Link

Gupta A, Ludäscher B, Martone M, Quian X, Ross E, Tran J, Zaslavsky I (2002) A system for managing alternate models in model-based mediation Advances in Databases 2405:54-7 Direct Link

Gustafsson J, Birinyi A, Crum J, Ellisman M, Brodin L, Shupliakov O (2002) Ultrastructural organization of lamprey reticulospinal synapses in three dimensions Journal of Comparative Neurology 450:167-182 Direct Link

Hadida-Hassan M, Young S, Peltier S, Wong M, Lamont S, Ellisman M (1999) Web-based telemicroscopy Journal of structural … 125:235-245 Direct Link

Hama K, Arii T, Katayama E, Martone M, Ellisman M (2004) Tri-dimensional morphometric analysis of astrocytic processes with high voltage electron microscopy of thick Golgi preparations Journal of Neurocytology 33:277-285 Direct Link

Hamilton D, Shepherd G, Martone M, Ascoli G (2012) An ontological approach to describing neurons and their relationships Frontiers in Neuroinformatics 6:15 PMC3338117

Hand G, Müller D, Nicholson B, Engel A, Sosinsky G (2002) Isolation and characterization of gap junctions from tissue culture cells. Journal of Molecular Biology 315:587-600 Direct Link

Hand G, Martone M, Stelljes A, Ellisman M, Sosinsky G (2001) Specific labeling of connexin43 in NRK cells using tyramide‐based signal amplification and fluorescence photooxidation Microscopy Research and Technique 52:331-343 Direct Link

Hatori M, Vollmers C, Zarrinpar A, DiTacchio L, Bushong E, Gill S, Leblanc M, Chaix A, Joens M, Fitzpatrick A, Ellisman M, Panda S (2012) Time-restricted feeding without reducing caloric intake prevents metabolic diseases in mice fed a high-fat diet. Cell Metabolism 15:848-60 PMID:22608008

Hauser J, Ellisman M, Steinau H (2009) Ultrasound enhanced endocytotic activity of human fibroblasts Ultrasound in Medicine Biology 35:2084-92 Direct Link

Hawrylycz M, Baldock R, Burger A, Hashikawa T, Johnson G, Martone M, Ng L, Lau C, Larsen S, Nissanov J, Puelles L, Ruffins S, Verbeek F, Zaslavsky I, Boline J (2011) Digital atlasing and standardization in the mouse brain PLoS Computational Biology 7:e1001065 PMC3033370

Hawrylycz M, Boline J, Burger A, Hashikawa T, Johnson G, Martone M, Ng L, Nissanov J, Puelles L, Ruffins S, Verbeek F, Zaslavsky I (2009) The INCF digital atlasing program: Report on digital atlasing standards in the rodent brain International Neuroinformatics Coordinating Facility:45 Direct Link

Hayashi T, Martone M, Yu Z, Thor A, Doi M, Holst M, Ellisman M, Hoshijima M (2009) Three-dimensional electron microscopy reveals new details of membrane systems for Ca2+ signaling in the heart Journal of Cell Science 122:1005-13 Direct Link

He L, Perkins G, Poblenz A, Harris J, Hung M, Ellisman M, Fox D (2003) Bcl-xL overexpression blocks bax-mediated mitochondrial contact site formation and apoptosis in rod photoreceptors of lead-exposed mice Proceedings of the National Academy of Sciences of the United States of America 100:1022-1027 Direct Link

Hegedus B, Hughes F, Garbow J, Gianino S, Banerjee D, Kim K, Ellisman M, Brantley M, Gutmann D (2009) Optic nerve dysfunction in a mouse model of neurofibromatosis-1 optic glioma Journal of Neuropathology and Experimental Neurology 68:542-551 PMC2746323

Hessler D, Young S, Carragher B, Martone M, Lamont S, Whittaker M, Milligan R, Masliah E, Hinshaw J, Ellisman M (1992) Programs for visualization in three-dimensional microscopy Neuroimage 1:55-67 Direct Link

Hessler D, Young S, Ellisman M (1996) A flexible environment for the visualization of three-dimensional biological structures Journal of Structural Biology 116:113-9 Direct Link

Hoffmann C, Gaietta G, Bünemann M, S.R. A, Oberdorff-Maass S, Behr B, Vilardaga J, Tsien R, Ellisman M, Lohse M (2005) A FlAsH-based FRET approach to determine G protein–coupled receptor activation in living cells Nature Methods 2:171-6 Direct Link

Hoffmann C, Gaietta G, Zürn A, Adams S, Terrillon S, Ellisman M, Tsien R, Lohse M (2010) Fluorescent labeling of tetracysteine-tagged proteins in intact cells Nature Protocols 5:1666-77 PMC3086663

Holcomb P, Deerinck T, Ellisman M, Spirou G (2013) Construction of a polarized neuron The Journal of Physiology 591:3145-50 PMID:23339176

Hoshijima M, Hayashi T, Jeon Y, Fu Z, Gu Y, Dalton N, Ellisman M, Xiao X, Powell F, Ross J (2011) Delta-Sarcoglycan Gene Therapy Halts Progression of Cardiac Dysfunction, Improves Respiratory Failure, and Prolongs Life in Myopathic HamstersClinical Circulation: Heart Failure 4:89-97 Direct Link

Hoshijima M, Hayashi T, Ellisman M (2008) Meso-scale imaging links cellular remodeling and functional defects in falling hearts (New Concepts for Assessing Cardiac Function (M), Featured Research Session,The 72nd Annual Scientific Meeting of the Japanese Circulation Society) Circulation journal: official journal of the Japanese Circulation Society 174 Direct Link

Hu B, Park M, Martone M, Fischer W, Ellisman M, Zivin J (1998) Assembly of proteins to postsynaptic densities after transient cerebral ischemia Journal of Neuroscience 18:625-33 Direct Link

Hu B, Martone M, Liu C (2004) Protein aggregation, unfolded protein response and delayed neuronal death after brain ischemia Maturation Phenomenon in Cerebral Ishchemia Part V:225-37 Direct Link

Hu Y, Baud V, Delhase M, Zhang P, Deerinck T, Ellisman M, Johnson R, Karin M (1999) Abnormal morphogenesis but intact IKK activation in mice lacking the IKKα subunit of IκB kinase Science 284:316-320 Direct Link

Huang L, Wang L, Ma Y, Durick K, Perkins G, Deerinck T, Ellisman M, Taylor S (1999) NH2-Terminal targeting motifs direct dual specificity A-kinase-anchoring protein 1 (D-AKAP1) to either mitochondria or endoplasmic reticulum. Journal of Cell Biology 145:951-9 PMC2133123

Huang S, Deerinck T, Ellisman M, Spector D (1994) In vivo analysis of the stability and transport of nuclear poly (A)+ RNA Journal of Cell Biology 126:877-99 PMC2120126

Huang S, Deerinck T, Ellisman M, Spector D (1998) The perinucleolar compartment and transcription The Journal of Cell Biology 143:35-47 PMC2132804

Huttemann M, Lee I, Perkins G, Britton S, Koch L, Malek M (2013) (-)-Epicatechin is associated with increased angiogenic and mitochondrial signalling in the hindlimb of rats selectively bred for innate low running capacity. Clinical Sciene 124:663-74 PMID:23252598

Ikeda Y, Martone M, Gu Y (2000) Altered membrane proteins and permeability correlate with cardiac dysfunction in cardiomyopathic hamsters American journal of physiology Heart and circulatory physiology 278:H1362-70 Direct Link

Imam F, Larson S, Bandrowski A, Grethe J, Gupta A, Martone M (2012) Development and use of ontologies inside the neuroscience information framework: a practical approach Frontiers in Genetics 3:111 PMC3381282

Imam F, Larson S, Grethe J, Gupta A, Brandowski A, Martone M (2011) NIFSTD and NeuroLex: A Comprehensive Neuroscience Ontology Development Based on Multiple Biomedical Ontologies and Community Involvement ICBO: International Conference on Biomedical Ontologies Direct Link

Jin L, Milazzo A, Kleinfelder S, Li S, Duttweiler F, Bouwer J, Peltier S, Ellisman M, Nguyen-Huu X (2007) Sensors, Cameras, and Systems for Scientific/Industrial Applications VIII - The intermediate size direct detection detector for electron microscopy SPIE Proceedings 6501:8 Direct Link

Jin L, Milazzo A, Kleinfelder S, Li S, Leblanc P, Duttweiler F, Bouwer J, Peltier S, Ellisman M, Xuong N (2008) Applications of direct detection device in transmission electron microscopy Journal of Structural Biology 161:352-358 PMC2359769

Johnson J, Perkins G, Giddabasappa A, Chaney S, Xiao W, White A, Brown J, Waggoner J, Ellisman M, Fox D (2007) Spatiotemporal regulation of ATP and Ca2+ dynamics in vertebrate rod and cone ribbon synapses Molecular Vision 13:887-919 PMC2774461

Jones C, Sayedhosseini M, Ellisman M, Tasdizen T (2013) Neuron segmentation in electron microscopy images using partial differential equations … Imaging (ISBI), 2013 …:1457 - 1460 Direct Link

Jones C, Liu T, Ellisman M, Tasdizen T (2013) Semi-automatic neuron segmentation in electron microscopy images via sparse labeling … Imaging (ISBI), 2013 … Direct Link

Ju W, Kim K, Lindsey J, Angert M, Patel A, Scott R, Liu Q, Crowston J, Ellisman M, Perkins G, Weinreb R (2009) Elevated hydrostatic pressure triggers release of OPA1 and cytochrome C, and induces apoptotic cell death in differentiated RGC-5 cells Molecular Vision 15:120-134 PMC2629709

Ju W, Morishita W, Tsui J, Gaietta G, Deerinck T, Adams S, Garner C, Tsien R, Ellisman M, Malenka R (2004) Activity-dependent regulation of dendritic synthesis and trafficking of AMPA receptors Nature Neuroscience 7:244-253 Direct Link

Ju W, Kim K, Angert M, Duong-Polk K, Lindsey J, Ellisman M, Weinreb R (2009) Memantine blocks mitochondrial OPA1 and cytochrome c release and subsequent apoptotic cell death in glaucomatous retina Investigative Ophthalmology & Visual Science 50:707-716 Direct Link

Ju W, Kim K, Lindsey J, Angert M, Duong-Polk K, Scott R, Kim J, Kukhmazov I, Ellisman M, Perkins G, Weinreb R (2008) Intraocular pressure elevation induces mitochondrial fission and triggers OPA1 release in glaucomatous optic nerve Investigative Ophthalmology & Visual Science 49:4903 Direct Link

Ju W, Liu Q, Kim K, Crowston J, Lindsey J, Agarwal N, Ellisman M, Perkins G, Weinreb R (2007) Elevated hydrostatic pressure triggers mitochondrial fission and decreases cellular ATP in differentiated RGC-5 cells Investigative Ophthalmology & Visual Science 48:2145-2151 Direct Link

Ju W, Kim K, Duong-Polk K, Lindsey J, Ellisman M, Weinreb R (2010) Increased optic atrophy type 1 expression protects retinal ganglion cells in a mouse model of glaucoma. Molecular Vision 16:1331-42 PMC2905637

Jurrus E, Watanabe S, Giuly R, Paiva A, Ellisman M, Jorgensen E, Tasdizen T (2011) Semi-Automated Neuron Boundary Detection and Slice Traversal Algorithm for Segmentation of Neurons from Electron Microscopy Images Neuroinformatics 11:5-29 Direct Link

Jurrus E, Watanabe S, Giuly R, Paiva A, Ellisman M, Jorgensen E, Tasdizen T (2013) Semi-Automated Neuron Boundary Detection and Nonbranching Process Segmentation in Electron Microscopy Images Neuroinformatics 11:5-29 Direct Link

Keller S, Lindstrom J, Ellisman M, Taylor P (2001) Adjacent basic amino acid residues recognized by the COP I complex and ubiquitination govern endoplasmic reticulum to cell surface trafficking of the nicotinic Journal of Biological Chemistry 276:18384-91 Direct Link

Kett L, Boassa D, Ho C, Rideout H, Hu J, Terada M, Ellisman M, Dauer W (2012) LRRK2 Parkinson disease mutations enhance its microtubule association Human Molecular Genetics 21:890-9 Direct Link

Kim C, Perez A, Perkins G, Ellisman M, Dauer W (2010) A molecular mechanism underlying the neural-specific defect in torsinA mutant mice Proceedings of the National Academy of Sciences of the United States of America 107:9861-6 Direct Link

Kim H, Schulze J, A.C. C, Sosinsky G, Martone M (2010) Multi-channel transfer function with dimensionality reduction Proceedings of SPIE 7530:75300A Direct Link

Kim H, Schulze J, Cone A, Sosinsky G, Martone M (2010) Dimensionality Reduction on Multi-Dimensional Transfer Functions for Multi-Channel Volume Data Sets Information visualization 9:167-180 PMC3153355

Kim J, O'Sullivan M, Sanchez C, Hwang M, Israel M, Brennand K, Deerinck T, Goldstein L, Gage F, Ellisman M, Ghosh A (2011) Investigating synapse formation and function using human pluripotent stem cell-derived neurons Proceedings of the National Academy of Sciences of the United States of America 108:3005-10 PMC3041068

Kim K, Ju W, Hegedus B, Gutmann D, Ellisman M (2010) Ultrastructural characterization of the optic pathway in a mouse model of neurofibromatosis-1 optic glioma. Neuroscience 170:178-88 PMC2926211

Kittelmann M, Hegermann J, Goncharov A, Taru H, Ellisman M, Richmond J, Jin Y, Eimer S (2013) Liprin-α/SYD-2 determines the size of dense projections in presynaptic active zones in C. elegans The Journal of cell biology 203:849-63 Direct Link

Kluck R, Esposti M, G Perkins G, C Renken C, T Kuwana T, E Bossy-Wetzel E, M Goldberg M, T Allen T, Barber M, Green D, Newmeyer D (1999) The pro-apoptotic proteins, Bid and Bax, cause a limited permeabilization of the mitochondrial outer membrane that is enhanced by cytosol The Journal of Cell Biology 147:809-22 Direct Link

Knott A, Perkins G, Schwarzenbacher R, Bossy-Wetzel E (2008) Mitochondrial fragmentation in neurodegeneration Nature Reviews Neuroscience 9:505-18 Direct Link

Knowles R, Sabry J, Martone M, Deerinck T, Ellisman M, Bassell C, Kosik K (1996) Translocation of RNA granules in living neurons Journal of Neuroscience 16:7812-20 Direct Link

Kola J, Harri J, Lawrie S, Rector A, Goble C, Martone M (2010) Towards an ontology for psychosis Cognitive Systems Research 11:42-52 Direct Link

Kopek B, Perkins G, Miller D, Ellisman M, Alquist P (2007) Three-dimensional analysis of a viral RNA replication complex reveals a virus-induced mini-organelle PLoS Biology 5:13 Direct Link

Kujjo L, Acton B, Perkins G, Ellisman M, D'Estaing S, Casper R, Jurisicova A, Perez G (2012) Ceramide and Its Transport Protein (CERT) Contribute to Deterioration of Mitochondrial Structure and Function in Aging Oocytes Mechanisms of Ageing and Development 134:43-52 PMID:23246342

Kumar V, Rutt B, Kurc T, Catalyurek U, Saltz J, Chow S, Lamont S, Martone M (2006) Large image correction and warping in a cluster environment SC 2006 Conference, Proceedings of the ACM/IEEE:38 Direct Link

Kumar V, Rutt B, Kurc T, Catalyurek U, Pan T, Chow S, Lamont S, Martone M, Saltz J (2008) Large-scale biomedical image analysis in grid environments IEEE transactions on information technology in biomedicine a publication of the IEEE Engineering in Medicine and Biology Society 12:154-61 Direct Link

Kusakabe T, Powell F, Ellisman M (1993) Ultrastructure of the glomus cells in the carotid body of chronically hypoxic rats: with special reference to the similarity of amphibian glomus cells The Anatomical Record 237:220-27 Direct Link

Kusakabe T, Hayashida Y, Matsuda H, Gono Y, Powell F, Ellisman M, Kawakami T, Takenaka T (1998) Hypoxic adaptation of the peptidergic innervation in the rat carotid body Brain Research 806:165-74 Direct Link

Kushnareva Y, Gerencser A, Bossy B, Ju W, White A, Waggoner J, Ellisman M, Perkins G, Bossy-Wetzel E (2013) Loss of OPA1 disturbs cellular calcium homeostasis and sensitizes for excitotoxicity. Cell Death and Dfferentiation 20:353-65 PMID:23138851

Kuwana T, Mackey M, Perkins G, Ellisman M, Latterich M, Schneiter R, Green D, Newmeyer D (2002) Bid, Bax, and lipids cooperate to form supramolecular openings in the outer mitochondrial membrane Cell 111:331-42 Direct Link

Larson S, Aprea C, Martinez J, Little D, Astakhov V, Kim H, Zaslavsky I, Martone M, Ellisman M (2010) An open google earth for neuroinformatics: The whole brain catalog Neuroinformatics 2010 Direct Link

Larson S, Iman F, Bakker R, Pham L, Martone M (2010) A multi-scale parts list for the brain: community-based ontology curation for neuroinformatics with NeuroLex. org Neuroinformatics 2010 Direct Link

Larson S, Maynard S, Imam F, Martone M (2009) NeuroLex. org–A semantic wiki for neuroinformatics based on the NIF Standard Ontology Frontiers in Neuroscience Conference:3 Direct Link

Larson S, Martone M (2009) Ontologies for neuroscience: what are they and what are they good for? Frontiers in Neuroscience 3:60-7 Direct Link

Larson S, Fong L, Gupta A, C. C, Bug W, Martone M (2007) A formal ontology of subcellular neuroanatomy Frontiers in Neuroinformatics 1:3 PMC2525993

Lathers A, Su M, Kulungowski A, Lin A, Mehta G, Peltier S, Deelman E, Ellisman M (2006) Enabling parallel scientific applications with workflow tools Challenges of Large Applications in Distributed Environments, 2006 IEEE:55-60 Direct Link

Lawrence A, Bouwer J, Perkins G, Ellisman M (2006) Transform-based backprojection for volume reconstruction of large format electron microscope tilt series. Journal of Structural Biology 154:144-167 PMID:16542854

Lee D, Lin A, Hutton T, Akiyama T, Shinji S, Lin F, Peltier S, Ellisman M, Huttonb T, Akiyamac T, Shinjic S, Lind F, Peltiera S (2003) Global telescience featuring IPv6 at iGrid2002 Future Generation Computer Systems 19:1031-1039 Direct Link

Lee D, Kim K, Shim M, Kim S, Ellisman M, Weinreb R, Ju W (2013) Coenzyme Q10 ameliorates oxidative stress and prevents mitochondrial alteration in ischemic retinal injury. Apoptosis : an international journal on programmed cell death PMID:24337820

Lee D, Kim K, Noh Y, Chai S, Lindsey J, Ellisman M, Weinreb R, Ju W (2012) Brimonidine blocks glutamate excitotoxicity-induced oxidative stress and preserves mitochondrial transcription factor a in ischemic retinal injury PloS One 7:e47098 Direct Link

Lee J, Budanov A, Park E, Birse R, Kim T, Perkins G, Ocorr K, Ellisman M, Bodmer R, Bier E, Karin M (2010) Sestrin as a feedback inhibitor of TOR that prevents age-related pathologies Science SKE 327:1223-8 Direct Link

Lee J, Budanov A, Talukdar S, Park E, Park H, Park H, Bandyopadhyay G, Li N, Aghajan M, Jang I, Wolfe A, Perkins G, Ellisman M, Bier E, Scadeng M, Foretz M, Viollet B, Olefsky J, Karin M (2012) Maintenance of metabolic homeostasis by Sestrin2 and Sestrin3. Cell metabolism 16:311-21 Direct Link

Lehto T, Janovjak H, Möller C, Severin F, Miaczynska M, Zerial M, Hand G, Sosinsky G, Müller D (2002) Cellular dynamics observed at sub-nanometer resolution using atomic force microscopy Microscopy and Microanalysis 8:892-3 Direct Link

Lenzi D, Crum J, Ellisman M, Roberts W (2002) Depolarization redistributes synaptic membrane and creates a gradient of vesicles on the synaptic body at a ribbon synapse Neuron 35:1085-97 Direct Link

Lenzi D, Runyeon J, Crum J, Ellisman M, Roberts W (1999) Synaptic vesicle populations in saccular hair cells reconstructed by electron tomography Journal of Neuroscience 19:119-132 Direct Link

Lev-Ram V, Nebyelul Z, Ellisman M, Huang P, Tsien R (1997) Absence of cerebellar long-term depression in mice lacking neuronal nitric oxide synthase Learning & Memory 4:169-77 Direct Link

Lewis J, Mostafavi I, Sosinsky G, Martone M (2007) Shape Priors by Kernel Density Modeling of PCA Residual Structure 2007 IEEE International Conference on Image Processing 4:333-6 Direct Link

Li S, Bouwer J, Duttweiler F, Ellisman M, Jin L, Leblanc P, Milazzo A, Peltier S, Xuong N, Kleinfelder S (2006) A new direct detection camera system for electron microscopy Proceedings of the SPIE:218-27 Direct Link

Li S, Crenshaw E, Rawson E (1990) Dwarf locus mutants lacking three pituitary cell types result from mutations in the POU-domain gene pit-1 Nature Direct Link

Li Z, Chu W, Hu Y, Delhase M, Deerinck T, Ellisman M, Johnson R, Karin M (1999) The IKKβ subunit of IκB kinase (IKK) is essential for nuclear factor κB activation and prevention of apoptosis The Journal of Experimental Medicine 189:1839-1845 Direct Link

Lichtenstein A, Gaietta G, Deerinck T, Crum J, Sosinsky G, Beyer E, Berthoud V (2009) The cytoplasmic accumulations of the cataract-associated mutant, Connexin50P88S, are long-lived and form in the endoplasmic reticulum Experimental Eye Research 88:600-9 Direct Link

Lin A, Dai L, Ung K, Peltier S, Ellisman M (2008) The Telescience Project: Transparent Grid Access for Scientific Communities Special Issue of Concurrency Computation - Practice and Experience–Science Gateways at GGF14 19:743-49 Direct Link

Lin A, Peltier S, Grethe J, Ellisman M (2007) Case studies on the use of workflow technologies for scientific analysis: The biomedical informatics research network and the telescience project Workflows for e-Science:109-25 Direct Link

Lin A, Maas P, Peltier S, Ellisman M (2004) Harnessing the Power of the Globus Toolkit Cluster World 2:12-14, 51 Direct Link

Lin A, Dai L, Ung K, Peltier S, Ellisman M (2005) The telescience project: Application to middleware interaction components 18th IEEE Symposium on ComputerBased Medical Systems CBMS05:543-8 Direct Link

Lin A, Dai L, Ung K, Mock J, Peltier S, Ellisman M (2005) The telescience tools: version 2.0 First International Conference on e-Science and Grid Computing, 2005:8 Direct Link

Lin W, Sanchez H, Deerinck T, Morris J, Ellisman M, Lee K (2000) Aberrant development of motor axons and neuromuscular synapses in erbB2-deficient mice Proceedings of the National Academy of Sciences of the United States of America 97:1299-1304 Direct Link

Liu C, Martone M, Ge P, Zhang F (2005) Translational complex aggregation after transient cerebral ischemia Journal of Cerebral Blood Flow & Metabolism 25 Direct Link

Liu C, Martone M, Hu B (2004) Protein ubiquitination in postsynaptic densities after transient cerebral ischemia Journal of Cerebral Blood Flow & Metabolism 24:1219-25 Direct Link

Lopreore C, Bartol T, Coggan J, Keller D, Sosinsky G, Ellisman M, Sejnowski T (2008) Computational modeling of three-dimensional electrodiffusion in biological systems: Application to the node of ranvier Biophysical journal 95:2624-2635 Direct Link

Lu W, Bushong E, Shih T, Ellisman M, Nicoll R (2013) The Cell-Autonomous Role of Excitatory Synaptic Transmission in the Regulation of Neuronal Structure and Function Neuron 78:433-9 Direct Link

Ludascher B, Gupta A, Martone M (2001) Model-based mediation with domain maps Proceedings 17th International Conference on Data Engineering:81-90 Direct Link

Ludäscher B, Gupta A, Martone M (2000) Model-based information integration in a neuroscience mediator system Proceeding: VLDB '00 Proceedings of the 26th International Conference on Very Large Data Bases:639-42 Direct Link

Ludäscher B, Gupta A, Martone M (2003) A model-based mediator system for scientific data management Managing Scientific Data:335-70 Direct Link

Lugli G, Larson J, Martone M (2005) Dicer and eIF2c are enriched at postsynaptic densities in adult mouse brain and are modified by neuronal activity in a calpain‐dependent manner Journal of Neurochemistry 94:896-905 Direct Link

Lutter M, Perkins G, Wang X (2001) The pro-apoptotic Bcl-2 family member tBid localizes to mitochondrial contact sites BMC Cell Biology 2:22 Direct Link

Luznik L, Martone M, Kraus G, Zhang Y, Xu Y, Ellisman M, Wong-Staal F (1995) Localization of human immunodeficiency virus Rev in transfected and virus-infected cells AIDS Research and Human Retroviruses 11:795-804 Direct Link

Marenco L, Li Y, Martone M (2008) The neuroscience information framework: a data and knowledge environment for neuroscience Neuroinformatics 6:149-60 Direct Link

Marenco L, Ascoli G, Martone M (2008) The NIF LinkOut broker: A web resource to facilitate federated data integration using NCBI Identifiers Neuroinformatics 6:219-27 Direct Link

Marenco L, Nadkarni P, Martone M, Gupta A (2007) Interoperability across neuroscience databases Methods In Molecular Biology 401:23-36 Direct Link

Marko M, Ellisman M, Medalia O (2008) The 4th international conference on electron tomography Journal of Structural Biology 161:219 PMC2289908

Martell J, Deerinck T, Sancak Y, Poulos T, Mootha V, Sosinsky G, Ellisman M, Ting A (2012) Engineered ascorbate peroxidase as a genetically encoded reporter for electron microscopy Nature Biotechnology 30:1143-8 Direct Link

Martin B, Deerinck T, Ellisman M (2007) Isoform-specific PKA dynamics revealed by dye-triggered aggregation and DAKAP1α-mediated localization in living cells Chemistry & Biology 14:1031-42 Direct Link

Martone M, Zhang S, Peltier S, Lin A, Lee D, Molina T, Gupta A, Ellisman M, Peltier S, Gupta G (2003) Informatics Resources for Electron Tomography Microscopy and Microanalysis 9:1164-1165 Direct Link

Martone M, Pollock J, Jones Y, Ellisman M (1996) Ultrastructural localization of dendritic messenger RNA in adult rat hippocampus Journal of Neuroscience 16:7437-7446 Direct Link

Martone M, Zhang S, Gupta A, Qian X, He H, Price D, Wong M, Santini S, Ellisman M (2003) The Cell-Centered Database: A Database for Multiscale Structural and Protein Localization Data from Light and Electron Microscopy Neuroinformatics 1:379-395 Direct Link

Martone M, Peltier S, Lamont S, Gupta A, Ludaescher B, Khetani S, Molina T, Ellisman M (2001) Increasing access to tomographic resources: web-based telemicroscopy and database Microscopy & Microanalysis 7:92-93 Direct Link

Martone M (2003) From Molecules to Brains: Navigating through Multi-resolution Imaging Data Using Knowledge-Guided Mediation :19-26 Direct Link

Martone M, Gupta A, Grethe J, Maynard S, Imam F (2013) NIFSTD: Towards a Comprehensive Ontology for Neuroscience Neuroscience information network:2 Direct Link

Martone M, Edelman V (1994) Organization of intracellular calcium regulatory proteins in the neuronal endoplasmic reticulum Proceedings of the Annual Meeting -Electron Microscopy Society of America Direct Link

Martone M, Sargis J, Tran J, Wong W (2007) Database resources for cellular electron microscopy Methods in Cell Biology 79:799-822 Direct Link

Martone M, Gupta A, Bertram L, Zaslavsky I, Ellisman M (2003) Federation of brain data through knowledge-guided mediation Neuroscience Databases Direct Link

Martone M, Tran J, Wong W, Sargis J, Fong L, Larson S, Lamont S, Gupta A, Ellisman M (2008) The cell centered database project: an update on building community resources for managing and sharing 3D imaging data Journal of Structural Biology 161:220-31 Direct Link

Martone M, Deerinck T, Young S, Ellisman M (1999) Three Dimensional Protein Localization Using High Voltage Electron Microscopy Acta Histochem Cytochem 32:35-43 Direct Link

Martone M, Gupta A, Ellisman M (2004) E-neuroscience: challenges and triumphs in integrating distributed data from molecules to brains Nature Neuroscience 7:467-72 Direct Link

Martone M, Gupta A, Wong M, Qian X, Sosinsky G, Ludäscher B, Ellisman M (2002) A cell-centered database for electron tomographic data. Journal of Structural Biology 138:145-55 PMID:12160711

Martone M, Hu B, Ellisman M (2000) Alterations of hippocampal postsynaptic densities following transient ischemia Hippocampus 10:610-6 Direct Link

Martone M, Deerinck T, Yamada N, Bushong E, Ellisman M (2000) Correlated 3D light and electron microscopy: Use of high voltage electron microscopy and electron tomography for imaging large biological structures Journal of Histotechnology 23:261-270 Direct Link

Martone M, Jones Y, Young S, Ellisman M, Zivin J, Hu B (1999) Modification of postsynaptic densities after transient cerebral ischemia: a quantitative and three-dimensional ultrastructural study Journal of Neuroscience 19:1988-1997 Direct Link

Martone M, Edelmann V, Ellisman M, Nef P (1999) Cellular and subcellular distribution of the calcium-binding protein NCS-1 in the central nervous system of the rat Cell and Tissue Research 295:295-407 Direct Link

Martone M, Peltier S, Ellisman M (2005) Building grid-based resources for neurosciences Databasing the brain: From data to knowledge (Neuroinformatics):111-121 Direct Link

Martone M, Yamada N, Deerinck T, Chow S, Peltier S, Ellisman M (1998) Multiscale Imaging of Cells of the Nervous System by Correlated Large Field 3D Light Microscopy and 3D IVEM and UHVEM INT CON on Electron Microscopy: Materials Science 2:157 Direct Link

Martone M, Zhang Y, Simpliciano V, Carragher B, Ellisman M (1993) Three-dimensional visualization of the smooth endoplasmic reticulum in Purkinje cell dendrites Journal of Neuroscience 13:4636-4646 Direct Link

Martone M, Albaa S, Edelmana V, Aireyb J, Ellismana M (1997) Distribution of inositol-1, 4, 5-trisphosphate and ryanodine receptors in rat neostriatum Brain Research 756:9-21 Direct Link

Martone M, Zaslavsky I, Gupta A, Memon A, Tran J, Fong L, Larson S, Ellisman M, Zaslavsky I, Tran J, Wong W, Ellisman M (2008) The smart atlas: spatial and semantic strategies for multiscale integration of brain data Brain:267-286 Direct Link

Martone M, Pollock J, Ellisman M (1998) Subcellular localization of mRNA in neuronal cells Molecular Neurobiology 18:227-46 Direct Link

Martone M, Holash J, Bayardo A, Pasquale E, Ellisman M (1997) Immunolocalization of the receptor tyrosine kinase EphA4 in the adult rat central nervous system Brain Research 771:238-250 Direct Link

Masliah E, Mallory M, Deerinck T, DeTeresa R, Lamont S, Miller A, Terry R, Carragher B, Ellisman M (1993) Re-evaluation of the structural organization of neuritic plaques in Alzheimer's disease Journal of Neuropathology and Experimental Neurology 52:619-632 Direct Link

Maynard S, Mungall C, Lewis S, Martone M (2010) A knowledge based approach to matching human neurodegenerative disease and associated animal models Neuroinformatics 2010 230 Direct Link

McAdams H, Andersen G, Downing K, Earnest T, Ellisman M, Gitai Z, Horowitz M, Larabell C, Shapiro L, Viollier P (2012) Dynamic spatial organization of multi-protein complexes controlling microbial polar organization, chromosome replication, and cytokinesis :5 Direct Link

McRae G, Ellisman M, Geller M (1993) IEEE Visualization'93 keynote panel VIS '93 Proceedings of the 4th conference on Visualization '93:4-6 Direct Link

Mejino J, Detwiler L, Turner J (2010) Enabling RadLex with the Foundational Model of Anatomy Ontology to Organize and Integrate Neuro-imaging Data AMIA 2010 Proceedings Direct Link

Mi H, Deerinck T, Jones M, Ellisman M, Schwartz T (1996) Inwardly rectifying K+ channels that may participate in K+ buffering are localized in microvilli of Schwann cells Journal of Neuroscience 15:2421-9 Direct Link

Mi H, Harris-Warrick R, Deerinck T, Inman I, Ellisman M, Schwarz T (1999) Identification and localization of Ca2+‐activated K+ channels in rat sciatic nerve Glia 26:166-175 Direct Link

Mi H, Deerinck T, Ellisman M, Schwartz T (1995) Differential distribution of closely related potassium channels in rat Schwann cells Journal of Neuroscience 15:3761-74 Direct Link

Middleton S, Latmani R, Mackey M, Ellisman M, Tebo B, Criddle C (2003) Cometabolism of Cr (VI) by Shewanella oneidensis MR‐1 produces cell‐associated reduced chromium and inhibits growth Biotechnology and Bioengineering 83:627-637 Direct Link

Milazzo A, Moldovan G, Lanman J, Jin L, Bouwer J, Klienfelder S, Peltier S, Ellisman M, Kirkland A, Xuong N (2010) Characterization of a direct detection device imaging camera for transmission electron microscopy Ultramicroscopy 110:744-7 Direct Link

Milazzo A, Leblanc P, Duttweiler F, Jin L, Bouwer J, Peltier S, Ellisman M, Bieser F, Matis H, Wieman H, Denes P, Kleinfelder S, Xuong N (2005) Active pixel sensor array as a detector for electron microscopy Ultramicroscopy 104:152-159 Direct Link

Milazzo A, Cheng A, Moeller A, Lyumkis D, Ellisman M, Xuong N, Carragher B, Potter C (2011) Initial evaluation of a direct detection device detector for single particle cryo-electron microscopy Journal of Structural Biology 176:404-8 Direct Link

Miller S, Yasuda M, Coats J, Jones Y, Martone M, Mayford M (2002) Disruption of dendritic translation of CaMKIIα impairs stabilization of synaptic plasticity and memory consolidation Neuron 36:507-19 Direct Link

Minamisawa S, Hoshijima M, Chu G, Ward C, Frank K, Gu Y, Martone M, Wang Y, Ross J, Kranias E, Giles W, Chien K (1999) Chronic phospholamban–sarcoplasmic reticulum calcium ATPase interaction is the critical calcium cycling defect in dilated cardiomyopathy Cell 99:313-22 Direct Link

Mironov A, Beznoussenko G, Trucco A, Lupetti P, Smith J, Geerts W, Koster A, Burger K, Martone M, Deerinck T, Ellisman M, Luini A (2003) ER-to-Golgi carriers arise through direct en bloc protrusion and multistage maturation of specialized ER exit domains Developmental Cell 5:583-594 Direct Link

Moisan T, Ellisman M, Buitenhuys C, Sosinsky G (2006) Differences in chloroplast ultrastructure of Phaeocystis antarctica in low and high light Marine Biology 149:1281-90 Direct Link

Molina T, Yang G, Lin A, Peltier S, Ellisman M (2005) A generalized service-oriented architecture for remote control of scientific imaging instruments e-Science and Grid Computing, 2005. First International Conference on:7 Direct Link

Moore R, Prince T, Ellisman M (1998) Data-intensive computing and digital libraries: 56 November 1998/Vol. 41, No. 11 COMMUNICATIONS OF THE ACM How to automate management of the flood of scientific data being collected in astronomical and neuroscience projects Communications of the ACM 41:56-62 Direct Link

Mungall C, Bandrowski A, Canada B, Chatyr-Aryamontri A, Cheng K, Conn P, Dolinsky K, Ellisman M, Eppig J, Grethe J, Kemnitz J, Iadonato S, Larson S, Magness C, Martone M, Haendel M (2011) An Ontology-Based Approach to Linking Model Organisms and Resources to Human Diseases International Conference on Biomedical Ontology:263-5 Direct Link

Newman H, Ellisman M, Orcutt J (2003) Data-intensive e-science frontier research Communications of the ACM 46:68-77 Direct Link

Nguyen D, Alavi M, Kim K, Kang T, Scott R, Noh Y, Lindsey J, Wissinger B, Ellisman M, Weinreb R, Perkins G, Ju W (2011) A new vicious cycle involving glutamate excitotoxicity, oxidative stress and mitochondrial dynamics Cell Death & Disease 2:e240 PMC3252734

Nguyen J, Soto I, Kim K, Bushong E, Oglesby E, Valiente-Soriano F, Yang Z, Davis C, Bedont J, Son J, Wei J, Buchman V, Zack D, Vidal-Sanz M, Ellisman M, Marsh-Armstrong N (2011) Myelination transition zone astrocytes are constitutively phagocytic and have synuclein dependent reactivity in glaucoma. Proceedings of the National Academy of Sciences of the United States of America 108:1176-81 PMC3024691

Nguyen-Huu X, Ellisman M, Kleinfelder S (2007) Direct collection transmission electron microscopy - Patent 7262411 B2 US Patent 7,262,411:16 Direct Link

Niikura Y, Dixit A, Scott R, Perkins G, Kitagawa K (2007) BUB1 mediation of caspase-independent mitotic death determines cell fate Journal of Cell Biology 178:283-96 Direct Link

Nogueira L, Ramirez-Sanchez I, Perkins G, Murphy A, Taub P, Ceballos G, Villarreal F, Hogan M, Malek M (2011) (-)-Epicatechin enhances fatigue resistance and oxidative capacity in mouse muscle. Journal of Physiology 589:4615-31 PMC3208228

Noh Y, Kim K, Shim M, Choi S, Ellisman M, Weinreb R, Perkins G, Ju W (2013) Inhibition of oxidative stress by coenzyme Q10 increases mitochondrial mass and improves bioenergetic function in optic nerve head astrocytes Cell death & … 4:e820 PMC3824651

Novakovic S, Deerinck T, Levinson S, Shrager P, Ellisman M (1996) Clusters of axonal Na+ channels adjacent to remyelinating Schwann cells Journal of Neurocytology 25:403-412 Direct Link

Nozaki K, Noro M, Nakagawa M, Date S, Baba K, Peltier S, Kawaguchi T, Akiyama T, Tamagawa H, Tanaka Y (2006) Computational oral and speech science on e-science infrastructures Proceedings of the 2006 ACM/IEEE conference on Supercomputing:298 Direct Link

O'Barr S, Caguioa J, Gruol D, Perkins G, Ember J, Hugli T, Cooper N (2001) Neuronal expression of a functional receptor for the C5a complement activation fragment Journal of Immunology 166:4154-62 Direct Link

Olson J, Ellisman M (2008) The Biomedical Informatics Research Network (12) Scientific Collaboration on the Internet:221-232 Direct Link

Orita S, Henry K, Mantuano E, Yamauchi K, De Corato A, Ishikawa T, Feltri M, Wrabetz L, Gaultier A, Pollack M, Ellisman M, Takahashi K, Gonias S, Campana W (2013) Schwann Cell LRP1 Regulates Remak Bundle Ultrastructure and Axonal Interactions to Prevent Neuropathic Pain The Journal of neuroscience : the official journal of the Society for Neuroscience 33:5590-5602 PMC3837698

Orloff D, Iwasa J, Martone M, Ellisman M, Kane C (2013) The cell: an image library-CCDB: a curated repository of microscopy data. Nucleic Acids Research 41:D1241-50 Direct Link

Oshima A, Tani K, Hiroaki Y, Fujiyoshi Y, Sosinsky G (2007) Three-dimensional structure of a human connexin26 gap junction channel reveals a plug in the vestibule. Proceedings of the National Academy of Sciences of the United States of America 104:10034-9 PMC1886001

Oshima A, Tani K, Hiroaki Y, Fujiyoshi Y, Sosinsky G (2008) Projection structure of a N-terminal deletion mutant of connexin 26 channel with decreased central pore density Cell communication adhesion 15:85-93 Direct Link

Oshima A, Tani K, Toloue M, Hiroaki Y, Smock A, Inukai S, Bruce N, Sosinsky G, Fujiyoshi Y (2010) Structures of Connexin26 Mutants Demonstrate a Global Flexibility of Subunits and N-Terminal Rearrangements in the Pore Biophysical Journal 98:92a-93a Direct Link

Oshima A, Tani K, Toloue M, Hiroaki Y, Smock A, Inukai S, Cone A, Nicholson B, Sosinsky G, Fujiyoshi Y (2011) Asymmetric configurations and N-terminal rearrangements in connexin26 gap junction channels Journal of Molecular Biology 405:724-35 Direct Link

Ou H, Kwiatkowski W, Deerinck T, Noske A, Blain K, Land H, Soria C, Powers C, May A, Shu X, Tsien R, Fitzpatrick J, Long J, Ellisman M, Choe S, O'Shea C (2012) A Structural Basis for the Assembly and Functions of a Viral Polymer that Inactivates Multiple Tumor Suppressors Cell 151:304-19 Direct Link

Ouyang Y, Deerinck T, Walton P, Airey J, Sutko J, Ellisman M (1993) Distribution of ryanodine receptors in the chicken central nervous system Brain Research 620:269-80 Direct Link

Ouyang Y, Wong M, Capani F, Rensing N, Lee C, Liu Q, Neusch C, Martone M, Wu J, Yamada K, Ellisman M, Choi D (2005) Transient decrease in F‐actin may be necessary for translocation of proteins into dendritic spines European Journal of Neuroscience 22:2995-3005 Direct Link

Pamenter M, Perkins G, Gu X, Ellisman M, Haddad G (2013) DIDS (4, 4-Diisothiocyanatostilbenedisulphonic Acid) Induces Apoptotic Cell Death in a Hippocampal Neuronal Cell Line and Is Not Neuroprotective against PloS one 8:e60804 Direct Link

Pamenter M, Ryu J, Hua S, Perkins G, Mendiola V, Gu X, Ellisman M, Haddad G (2012) DIDS prevents ischemic membrane degradation in cultured hippocampal neurons by inhibiting matrix metalloproteinase release PLoS One 7:e43995 PMC3427179

Pamenter M, Perkins G, McGinness A, Gu X, Ellisman M, Haddad G (2012) Autophagy and apoptosis are differentially induced in neurons and astrocytes treated with an in vitro mimic of the ischemic penumbra. PloS One 7:e51469 Direct Link

Park S, Kim K, Lindsey J, Dai Y, Heo H, Nguyen D, Ellisman M, Weinreb R, Ju W (2011) A selective inhibitor of drp1, mdivi-1, increases retinal ganglion cell survival in acute ischemic mouse retina. Investigative ophthalmology & visual science 52:2837-43 Direct Link

Pasquale E, Deerinck T, Singer S, Ellisman M (1992) Cek5, a membrane receptor-type tyrosine kinase, is in neurons of the embryonic and postnatal avian brain Journal of Neuroscience 12:3956-3967 Direct Link

Peltier S, Bouwer J (2005) Design of a new 8k x 8k lens coupled detector for wide-field, high-resolution transmission electron microscopy Microscopy & Microanalysis 11:610-1 Direct Link

Peltier S, LIn A, Lee D, Mock S, Lamont S, Molina T, Wong M, Dai L, Martone M, Ellisman M (2003) The Telescience Portal for advanced tomography applications Journal of Parallel and Distributed Computing 63:539-550 Direct Link

Peltier S (1996) Automated digital image mosaicing for telemicroscopy :174 Direct Link

Peltier S, Ellisman M (2003) The National Institutes of Health (NIH) is pioneering the use of Grid infra-structure for medical research and patient care through the Biomedical Informatics Research Network (BIRN) project. Started in September 2001, BIRN is developing and evolving the The Grid 2: Blueprint for a New Computing Infrastructure 1:112-6 Direct Link

Peltier S, Hadida M, Levy D, Crum J, Wong M, Lamont S, Ellisman M (2000) Web-based Telemicroscopy with the JEM-4000EX JeolNews, Special Edition for Microscopy and Microanalysis Direct Link

Peltier S, Bouwer J, Xuong N, Ellisman M (2003) High performance digital imaging for transmission electron microscopy Microscopy & Microanalysis 9:1566-1567 Direct Link

Perkins G, Goodenough D, Sosinsky G (1998) Formation of the gap junction intercellular channel requires a 30 degree rotation for interdigitating two apposing connexons Journal of molecular biology 277:171-7 Direct Link

Perkins G, Goodenough D, Sosinsky G (1997) Three-dimensional structure of the gap junction connexon Biophysical journal 72:533-44 Direct Link

Perkins G, Tjong J, Brown J, Poquiz P, Scott R, Kolson D, Ellisman M, Spirou G (2010) The micro-architecture of mitochondria at active zones: electron tomography reveals novel anchoring scaffolds and cristae structured for high-rate metabolism. Journal of Neuroscience 30:1015-26 Direct Link

Perkins G, Sosinsky G, Ghassemzadeh S, Perez A, Jones Y, Ellisman M (2008) Electron tomographic analysis of cytoskeletal cross-bridges in the paranodal region of the node of Ranvier in peripheral nerves Journal of Structural Biology 161:469-480 Direct Link

Perkins G, Wang L, Huang L, Humphries K, Yao V, Martone M, Deerinck T, Barraclough D, Violin J, Smith D, Newton A, Scott J, Taylor S, Ellisman M (2001) PKA, PKC, and AKAP localization in and around the neuromuscular junction BMC Neuroscience 2:17 Direct Link

Perkins G, Renken C, Van Der I, Ellisman M, Neupert W, Frey T (2001) Electron tomography of mitochondria after the arrest of protein import associated with Tom19 depletion European Journal of Cell Biology 80:139-150 Direct Link

Perkins G, Hsiao Y, Yin S, Tjong J, Tran M, Lau J, Xue J, Liu S, Ellisman M, Zhou D (2012) Ultrastructural modifications in the mitochondria of hypoxia-adapted Drosophila melanogaster. PloS One 7:e45344 PMC3446896

Perkins G, Frey T (2002) Electron tomography Encyclopedia of Molecular Biology Direct Link

Perkins G, Ellisman M, Fox D (2004) The structure–function correlates of mammalian rod and cone photoreceptor mitochondria: observations and unanswered questions Mitochondrion 4:695-703 Direct Link

Perkins G, Ellisman M, Fox D (2003) Three-dimensional analysis of mouse rod and cone mitochondrial cristae architecture: bioenergetic and functional implications Molecular Vision 9:60-73 Direct Link

Perkins G, Ellisman M (2011) Mitochondrial configurations in peripheral nerve suggest differential ATP production Journal of Structural Biology 173:117-27 PMC3078762

Perkins G, Scott R, Perez A, Ellisman M, Johnson J, Fox D (2012) Bcl-xL-mediated remodeling of rod and cone synaptic mitochondria after postnatal lead exposure: Electron microscopy, tomography and oxygen consumption Molecular vision 18:3029-48 PMC3534145

Perkins G, Frey T (2000) Microscopy, Optical Encyclopedia of Microbiology: LP 3:288 Direct Link

Perkins G, Sun M, Frey T (2009) Correlated Light and Electron Microscopy/Electron Tomography of Mitochondria In Situ Methods in enzymology 456:29-52 Direct Link

Perkins G, Bossy-Wetzel E, Ellisman M (2009) New insights into mitochondrial structure during cell death Experimental Neurology 218:183-92 Direct Link

Pezzoli K, Tukey R, Sarabia H, Zaslavsky I, Miranda M, Suk W, Lin A, Ellisman M (2007) The NIEHS environmental health sciences data resource portal: placing advanced technologies in service to vulnerable communities Environmental Health Perspectives 115:564-571 PMC1852670

Phan S, Lawrence A, Molina T, Lanman J, Berlanga M, Terada M, Kulungowski A, Obayashi J, Ellisman M (2012) TxBR montage reconstruction for large field electron tomography Journal of Structural Biology 180:154-64 Direct Link

Pollock J, Ellisman M, Benzer S (1990) Subcellular localization of transcripts in Drosophila photoreceptor neurons: chaoptic mutants have an aberrant distribution. Genes & Development 4:806-21 Direct Link

Powell F, Kusakabe T, Ellisman M (1994) Effects of Chronic Hypoxia on Rat Carotid Body and Toad Carotid Labyrinth Glomus Cells Arterial Chemoreceptors 360:365-7 Direct Link

Price D, Ludwig J, Mi H, Schwarz T, Ellisman M (2002) Distribution of rSlo Ca 2+-activated K+ channels in rat astrocyte perivascular endfeet Brain Research 956:183-93 Direct Link

Price D, Rockenstein E, Ubhi K, Phung V, MacLean-Lewis N, Askay D, Cartier A, Spencer B, Patrick C, Desplats P, Ellisman M, Masliah E (2010) Alterations in mGluR5 expression and signaling in Lewy body disease and in transgenic models of alpha-synucleinopathy--implications for excitotoxicity. PloS one 5:16 PMC2982819

Price D, Rockenstein E, MacLean N, Phung V, Masliah E, Ellisman M (2006) P1-024: Altered dopamine receptor immunoreactivity in CNS of transgenic mice overexpressing alpha-synuclein Alzheimer's & Dementia: The Journal of the Alzheimer's Association 2:S101 Direct Link

Price D, Chow S, Hakozaki H, Phung V, Smarr B, Peltier S, Martone M, Ellisman M (2004) Application of a Multi-Photon High-Resolution Large-Scale Montage Imaging Technique to Characterize Transgenic Mouse Models of Human Neurodisorders Microscopy & Microanalysis 10:1483 Direct Link

Price D, Chow S, Maclean N, Hakozaki H, Peltier S, Martone M, Ellisman M (2006) High-resolution large-scale mosaic imaging using multiphoton microscopy to characterize transgenic mouse models of human neurological disorders Neuroinformatics 4:65-80 Direct Link

Qian X, Ludäscher B, Martone M, Gupta A (2002) Navigating Virtual Information Sources with Know-ME Advances in Database Technology 2287:739-41 Direct Link

Ragsdale E, Ngo P, Crum J, Ellisman M, Baldwin J (2009) Comparative, three-dimensional anterior sensory reconstruction of Aphelenchus avenae (nematoda: Tylenchomorpha) Journal of Comparative Neurology 517:616-32 Direct Link

Ragsdale E, Phuong T, Crum J, Ellisman M, Baldwin J, Ngo P (2010) Reconstruction of the pharyngeal corpus of Aphelenchus avenae (Nematoda: Zoological Journal of the Linnean Society 161:1-30 Direct Link

Ragsdale E, Crum J, Ellisman M, Baldwin J (2008) Three‐dimensional reconstruction of the stomatostylet and anterior epidermis in the nematode Aphelenchus avenae (Nematoda: Aphelenchidae) with implications for Journal of Morphology 269:1181-96 Direct Link

Ramirez-Sanchez I, Nogueira L, Moreno A, Murphy A, Taub P, Perkins G, Ceballos G, Hogan M, Malek M, Villarreal F (2012) Stimulatory effects of the flavanol (-)-epicatechin on cardiac angiogenesis: additive effects with exercise. Journal of Cardiovascular Pharmacology 60:429-38 Direct Link

Rasband M, Trimmer J, Schwarz T, Levinson S, Ellisman M, Schachner M, Shrager P (1998) Potassium channel distribution, clustering, and function in remyelinating rat axons Journal of Neuroscience 18:36-47 Direct Link

Reddy T, Li X, Jones Y, Ellisman M, Ching G, Liem R, Wong-Staal F (1998) Specific interaction of HTLV tax protein and a human type IV neuronal intermediate filament protein Proceedings of the National Academy of Sciences of the United States of America 95:702-7 Direct Link

Renken C, Siragusa G, Perkins G, Washington L, Nulton J, Salamon P, Frey T (2002) A thermodynamic model describing the nature of the crista junction: a structural motif in the mitochondrion Journal of Structural Biology 138:137-44 Direct Link

Ricci J, Muñoz-Pinedo C, Fitzgerald P, Bailly-Maitre B, Perkins G, Yadava N, Scheffler I, Ellisman M, Green D (2004) Disruption of mitochondrial function during apoptosis is mediated by caspase cleavage of the p75 subunit of complex I of the electron transport chain Cell 117:773-786 Direct Link

Ruiz-Lozano P, Smith S, Perkins G, Kubalak S, Boss G, Sucov H, Evans R, Chien K (1998) Energy deprivation and a deficiency in downstream metabolic target genes during the onset of embryonic heart failure in RXRalpha−/− embryos Development 125:533-44 Direct Link

Ryoke T, Gu Y, Ikeda Y, Martone M, Oh S, Jeon E, Knowlton K, Ross J (2002) Apoptosis and oncosis in the early progression of left ventricular dysfunction in the cardiomyopathic hamster Basic research in cardiology 97:65-75 Direct Link

Saini V, Martyshkin D, Mirov S, Perez A, Perkins G, Ellisman M, Towner V, Wu H, Pereboeva L, Borovjagin A, Curiel D, Everts M (2008) An Adenoviral Platform for Selective Self‐Assembly and Targeted Delivery of Nanoparticles Small 4:262-269 Direct Link

Sanna P, Deerinck T, Ellisman M (1999) Localization of a passively transferred human recombinant monoclonal antibody to herpes simplex virus glycoprotein D to infected nerve fibers and sensory neurons Journal of Virology 73:8817-23 Direct Link

Schaad N, Castro E, Nef S, Hegi S, Hinrichsen R, Martone M, Ellisman M, Sikkink R, Rusnak F, Sygush J, Nef P (1996) Direct modulation of calmodulin targets by the neuronal calcium sensor NCS-1 Proceedings of the National Academy of Sciences of the United States of America 93:9253-9258 Direct Link

Sekirnjak C, Martone M, Weiser M, Deerinck T, Bueno E, Rudy B, Ellisman M (1997) Subcellular localization of the K+ channel subunit Kv3. 1b in selected rat CNS neurons. Brain Research 766:173-187 Direct Link

Sen D, Deerinck T, Ellisman M (2008) Quantum dots for tracking dendritic cells and priming an immune response in vitro and in vivo PLoS One 3:e3290 Direct Link

Seyedhosseini M, Ellisman M, Tasdizen T (2013) Segmentation of mitochondria in electron microscopy images using algebraic curves … Imaging (ISBI), 2013 …:860 - 863 Direct Link

Seyedhosseini S, Kumar R, Jurrus E, Giuly R, Ellisman M, Pfister H, Tasdizen T (2011) Detection of neuron membranes in electron microscopy images using multi-scale context and radon-like features Medical Image Computing and Computer-Assisted Intervention 14:8 Direct Link

Shanks N, Maruo T, Farina A, Ellisman M, Nakagawa T (2010) Contribution of the global subunit structure and stargazin on the maturation of AMPA receptors Journal of Neuroscience 30:2728-40 PMC2842908

Shawkey M, Saranathan V, Pálsdóttir H, Crum J, Ellisman M, Auer M, Prum R (2009) Electron tomography, three-dimensional Fourier analysis and colour prediction of a three-dimensional amorphous biophotonic nanostructure Journal of the Royal Society Interface the Royal Society 6:S213-S220 Direct Link

Sheikh K, Deerinck T, Ellisman M, Griffin J (1999) The distribution of ganglioside-like moieties in peripheral nerves Brain 122:449-60 Direct Link

Shigetomi E, Bushong E, Haustein M, Tong X, Jackson-Weaver O, Kracun S, Xu J, Sofroniew M, Ellisman M, Khakh B (2013) Imaging calcium microdomains within entire astrocyte territories and endfeet with GCaMPs expressed using adeno-associated viruses. The Journal of general physiology 141:633-47 PMC3639581

Shoop R, Chang K, Ellisman M, Berg D (2001) Synaptically driven calcium transients via nicotinic receptors on somatic spines Journal of Neuroscience 21:771-81 Direct Link

Shoop R, Martone M, Yamada M, Ellisman M, Berg D (1999) Neuronal acetylcholine receptors with α7 subunits are concentrated on somatic spines for synaptic signaling in embryonic chick ciliary ganglia Journal of Neuroscience 19:692-704 Direct Link

Shoop R, Esquenazi E, Yamada N, Ellisman M, Berg D (2002) Ultrastructure of a somatic spine mat for nicotinic signaling in neurons Journal of Neuroscience 22:748-56 Direct Link

Shu X, Lev-Ram V, Olson E, Aguilera T, Jiang T, Whitney M, Crisp J, Steinbach P, Deerinck T, Ellisman M, Ellies L, Nguyen Q, Tsien R (2011) Spiers Memorial Lecture. Breeding and building molecular spies. Faraday Discussions 149:Discussion 63-77 PMID:21413170

Shu X, Lev-Ram V, Gaietta G, Deerinck T, Ramko E, Davidson M, Ellisman M, Tsien R (2010) Genetically Encoded Singlet Oxygen Generator (SOG) Requiring No Exogenous Cofactors Biophysical Journal 98:612a-612a Direct Link

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